How to Indexing and Optimising Mysql Database

Database management systems implement abstract concepts but do so on real hardware bound by real physical constraints. As a result, queries take time—sometimes an annoyingly long time. Find out how to minimize your wait in this sample chapter.

The world of relational database theory is a world dominated by tables and sets, and operations on tables and sets. A database is a set of tables, and a table is a set of rows and columns. When you issue aSELECT statement to retrieve rows from a table, you get back another set of rows and columns—that is, another table. These are abstract notions that make no reference to the underlying representation a database system uses to operate on the data in your tables. Another abstraction is that operations on tables happen all at once; queries are conceptualized as set operations and there is no concept of time in set theory.

The real world, of course, is quite different. Database management systems implement abstract concepts but do so on real hardware bound by real physical constraints. As a result, queries take time—sometimes an annoyingly long time. And we, being impatient creatures, don't like to wait, so we leave the abstract world of instantaneous mathematical operations on sets and look around for ways to speed up our queries. Fortunately, there are several techniques for doing so:

• We index tables to allow the database server to look up rows more quickly.
• We consider how to write queries to take advantage of those indexes to the fullest extent, and use the EXPLAIN statement to check whether the MySQL server really is doing so.
• We write queries to affect the server's scheduling mechanism so that queries arriving from multiple clients cooperate better.
• We modify the server's operating parameters to get it to perform more efficiently. We think about what's going on with the underlying hardware and how we can work around its physical constraints to improve performance.

Those are the kinds of issues that this chapter focuses on, with the goal of assisting you in optimizing the performance of your database system so that it processes your queries as quickly as possible. MySQL is already quite fast, but even the fastest database can run queries more quickly if you help it do so.

Using Indexing

Indexing is the most important tool you have for speeding up queries. Other techniques are available to you, too, but generally the one thing that makes the most difference is the proper use of indexes. On the MySQL mailing list, people often ask for help in making a query run faster. In a surprisingly large number of cases, there are no indexes on the tables in question, and adding indexes often solves the problem immediately. It doesn't always work like that, because optimization isn't always simple. Nevertheless, if you don't use indexes, in many cases you're just wasting your time trying to improve performance by other means. Use indexing first to get the biggest performance boost and then see what other techniques might be helpful.

This section describes what an index is and how indexing improves query performance. It also discusses the circumstances under which indexes might degrade performance and provides guidelines for choosing indexes for your table wisely. In the next section, we'll discuss MySQL's query optimizer that attempts to find the most efficient way to execute queries. It's good to have some understanding of the optimizer in addition to knowing how to create indexes because then you'll be better able to take advantage of the indexes you create. Certain ways of writing queries actually prevent your indexes from being useful, and generally you'll want to avoid having that happen.

Benefits of Indexing

Let's consider how an index works by beginning with a table that has no indexes. An unindexed table is simply an unordered collection of rows. For example, Figure 4.1 shows the ad table that was discussed in Chapter 1, "Getting Started with MySQL and SQL." There are no indexes on this table, so to find the rows for a particular company, it's necessary to examine each row in the table to see if it matches the desired value. This involves a full table scan, which is slow, as well as tremendously inefficient if the table is large but contains only a few records that match the search criteria.

Figure 4.2 shows the same table, but with the addition of an index on the company_numcolumn in the ad table. The index contains an entry for each row in the ad table, but the index entries are sorted by company_num value. Now, instead of searching through the table row by row looking for items that match, we can use the index. Suppose that we're looking for all rows for company 13. We begin scanning the index and find three values for that company. Then we reach the index value for company 14, which is higher than the one we're looking for. Index values are sorted, so when we read the index record containing 14, we know we won't find any more matches and can quit looking. Thus, one efficiency gained by using the index is that we can tell where the matching rows end and can skip the rest. Another efficiency comes about through the use of positioning algorithms for finding the first matching entry without doing a linear scan from the start of the index (for example, a binary search is much quicker than a scan). That way, we can quickly position to the first matching value and save a lot of time in the search. Databases use various techniques for positioning to index values quickly, but it's not so important here what those techniques are. What's important is that they work and that indexing is a good thing.

Figure 4.1 Unindexed ad table.

Figure 4.2 Indexed ad table.

You might be asking why we don't just sort the data rows and dispense with the index. Wouldn't that produce the same type of improvement in search speed? Yes, it would—if the table had a single index. But you might want to add a second index, and you can't sort the data rows two different ways at once. (For example, you might want one index on customer names and another on customer ID numbers or phone numbers.) Using indexes as entities separate from the data rows solves the problem and allows multiple indexes to be created. In addition, rows in the index are generally shorter than data rows. When you insert or delete new values, it's easier to move around shorter index values to maintain the sort order than to move around the longer data rows.

The particular details of index implementations vary for different MySQL storage engines. For example, for a MyISAM table, the table's data rows are kept in a data file, and index values are kept in an index file. You can have more than one index on a table, but they're all stored in the same index file. Each index in the index file consists of a sorted array of key records that are used for fast access into the data file.

By contrast, the BDB and InnoDB storage engines do not separate data rows and index values in the same way, although both maintain indexes as sets of sorted values. By default, the BDB engine uses a single file per table to store both data and index values. The InnoDB engine uses a single tablespace within which it manages data and index storage for all InnoDB tables. InnoDB can be configured to create each table with its own tablespace, but even so, a table's data and indexes are stored in the same tablespace file.

The preceding discussion describes the benefit of an index in the context of single-table queries, where the use of an index speeds searches significantly by eliminating the need for full table scans. Indexes are even more valuable when you're running queries involving joins on multiple tables. In a single-table query, the number of values you need to examine per column is the number of rows in the table. In a multiple-table query, the number of possible combinations skyrockets because it's the product of the number of rows in the tables.

Suppose that you have three unindexed tables, t1, t2, and t3, each containing a column i1,i2, and i3, respectively, and each consisting of 1,000 rows that contain the numbers 1 through 1000. A query to find all combinations of table rows in which the values are equal looks like this:

SELECT t1.i1, t2.i2, t3.i3
FROM t1, t2, t3
WHERE t1.i1 = t2.i2 AND t2.i1 = t3.i3;

The result of this query should be 1,000 rows, each containing three equal values. If we process the query in the absence of indexes, we have no idea which rows contain which values without scanning them all. Consequently, we must try all combinations to find the ones that match the WHERE clause. The number of possible combinations is 1,000 x 1,000 x 1,000 (one billion!), which is a million times more than the number of matches. That's a lot of wasted effort. The example illustrates that as tables grow, the time to process joins on those tables grows even more if no indexes are used, leading to very poor performance. We can speed things up considerably by indexing the tables, because the indexes allow the query to be processed like this:

1. Select the first row from table t1 and see what value the row contains.
2. Using the index on table t2, go directly to the row that matches the value from t1. Similarly, using the index on table t3, go directly to the row that matches the value from t2.
3. Proceed to the next row of table t1 and repeat the preceding procedure. Do this until all rows in t1 have been examined.

In this case, we still perform a full scan of table t1, but we can do indexed lookups on t2and t3 to pull out rows from those tables directly. The query runs about a million times faster this way—literally. This example is contrived for the purpose of making a point, of course. Nevertheless, the problems it illustrates are real, and adding indexes to tables that have none often results in dramatic performance gains.

MySQL uses indexes in several ways:

• As just described, indexes are used to speed up searches for rows matching terms of aWHERE clause or rows that match rows in other tables when performing joins.
• For queries that use the MIN() or MAX() functions, the smallest or largest value in an indexed column can be found quickly without examining every row.
• MySQL can often use indexes to perform sorting and grouping operations quickly forORDER BY and GROUP BY clauses.
• Sometimes MySQL can use an index to reading all the information required for a query. Suppose that you're selecting values from an indexed numeric column in a MyISAM table, and you're not selecting other columns from the table. In this case, when MySQL reads an index value from the index file, it obtains the same value that it would get by reading the data file. There's no reason to read values twice, so the data file need not even be consulted.

Costs of Indexing

In general, if MySQL can figure out how to use an index to process a query more quickly, it will. This means that, for the most part, if you don't index your tables, you're hurting yourself. You can see that I'm painting a rosy picture of the benefits of indexing. Are there disadvantages? Yes, there are. There are costs both in time and in space. In practice, these drawbacks tend to be outweighed by the advantages, but you should know what they are.

First, indexes speed up retrievals but slow down inserts and deletes, as well as updates of values in indexed columns. That is, indexes slow down most operations that involve writing. This occurs because writing a record requires writing not only the data row, it requires changes to any indexes as well. The more indexes a table has, the more changes need to be made, and the greater the average performance degradation. In the section "Loading Data Efficiently," we'll go into more detail about this phenomenon and what you can do about it.

Second, an index takes up disk space, and multiple indexes take up correspondingly more space. This might cause you to reach a table size limit more quickly than if there are no indexes:

• For a MyISAM table, indexing it heavily may cause the index file to reach its maximum size more quickly than the data file.
• For BDB tables, which store data and index values together in the same file, adding indexes causes the table to reach the maximum file size more quickly.
• All InnoDB tables that are located within the InnoDB shared tablespace compete for the same common pool of space, and adding indexes depletes storage within this tablespace more quickly. However, unlike the files used for MyISAM and BDB tables, the InnoDB shared tablespace is not bound by your operating system's file-size limit, because it can be configured to use multiple files. As long as you have additional disk space, you can expand the tablespace by adding new components to it.
InnoDB tables that use individual tablespaces are constrained the same way as BDB tables because data and index values are stored together in a single file.

The practical implication of both these factors is that if you don't need a particular index to help queries perform better, don't create it.

Choosing Indexes

The syntax for creating indexes is covered in the section "Creating Indexes," of Chapter 2, "MySQL SQL Syntax and Use." I assume here that you've read that section. But knowing syntax doesn't in itself help you determine how your tables should be indexed. That requires some thought about the way you use your tables. This section gives some guidelines on how to identify candidate columns for indexing and how best to set up indexes:

Index columns that you use for searching, sorting, or grouping, not columns you only display as output. In other words, the best candidate columns for indexing are the columns that appear in your WHERE clause, columns named in join clauses, or columns that appear in ORDER BY or GROUP BY clauses. Columns that appear only in the output column list following the SELECT keyword are not good candidates:

SELECT
  col_a                      <- not a candidate
FROM
  tbl1 LEFT JOIN tbl2
  ON tbl1.col_b = tbl2.col_c <- candidates
WHERE
  col_d = expr;              <- a candidate

The columns that you display and the columns you use in the WHERE clause might be the same, of course. The point is that appearance of a column in the output column list is not in itself a good indicator that it should be indexed.

Columns that appear in join clauses or in expressions of the form col1 = col2 in WHEREclauses are especially good candidates for indexing. col_b and col_c in the query just shown are examples of this. If MySQL can optimize a query using joined columns, it cuts down the potential table-row combinations quite a bit by eliminating full table scans.

Consider column cardinality. The cardinality of a column is the number of distinct values that it contains. For example, a column that contains the values 1, 3, 7, 4, 7, and 3 has a cardinality of four. Indexes work best for columns that have a high cardinality relative to the number of rows in the table (that is, columns that have many unique values and few duplicates). If a column contains many different age values, an index will differentiate rows readily. An index will not help for a column that is used to record sex and contains only the two values 'M' and 'F'. If the values occur about equally, you'll get about half of the rows whichever value you search for. Under these circumstances, the index might never be used at all, because the query optimizer generally skips an index in favor of a full table scan if it determines that a value occurs in a large percentage of a table's rows. The conventional wisdom for this percentage used to be "30%." Nowadays the optimizer is more complex and takes other factors into account, so the percentage is not the sole determinant of when MySQL prefers a scan over using an index.

Index short values. Use smaller data types when possible. For example, don't use aBIGINT column if a MEDIUMINT is large enough to hold the values you need to store. Don't use CHAR(100) if none of your values are longer than 25 characters. Smaller values improve index processing in several ways:

• Shorter values can be compared more quickly, so index lookups are faster.
• Smaller values result in smaller indexes that require less disk I/O.
• With shorter key values, index blocks in the key cache hold more key values. MySQL can hold more keys in memory at once, which improves the likelihood of locating key values without reading additional index blocks from disk.

For the InnoDB and BDB storage engines that use clustered indexes, it's especially beneficial to keep the primary key short. A clustered index is one where the data rows are stored together with (that is, clustered with) the primary key values. Other indexes are secondary indexes; these store the primary key value with the secondary index values. A lookup in a secondary index yields a primary key value, which then is used to locate the data row. The implication is that primary key values are duplicated into each secondary index, so if primary key values are longer, the extra storage is required for each secondary index as well.

Index prefixes of string values. If you're indexing a string column, specify a prefix length whenever it's reasonable to do so. For example, if you have a CHAR(200) column, don't index the entire column if most values are unique within the first 10 or 20 characters. Indexing the first 10 or 20 characters will save a lot of space in the index, and probably will make your queries faster as well. By indexing shorter values, you gain the advantages described in the previous item relating to comparison speed and disk I/O reduction. You want to use some common sense, of course. Indexing just the first character from a column isn't likely to be that helpful because then there won't be very many distinct values in the index.

You can index prefixes of CHAR, VARCHAR, BINARY, VARBINARY, BLOB, and TEXT columns. The syntax is described in "Creating Indexes," in Chapter 2.

Take advantage of leftmost prefixes. When you create an n-column composite index, you actually create n indexes that MySQL can use. A composite index serves as several indexes because any leftmost set of columns in the index can be used to match rows. Such a set is called a "leftmost prefix." (This is different from indexing a prefix of a column, which is using the first n characters of the column for index values.)

Suppose that you have a table with a composite index on columns named state, city, andzip. Rows in the index are sorted in state/city/zip order, so they're automatically sorted in state/city order and in state order as well. This means that MySQL can take advantage of the index even if you specify only state values in a query, or only state and city values. Thus, the index can be used to search the following combinations of columns:

state, city, zip
state, city
state

MySQL cannot use the index for searches that don't involve a leftmost prefix. For example, if you search by city or by zip, the index isn't used. If you're searching for a given state and a particular ZIP code (columns 1 and 3 of the index), the index can't be used for the combination of values, although MySQL can narrow the search using the index to find rows that match the state.

Don't over-index. Don't index everything in sight based on the assumption "the more, the better." That's a mistake. Every additional index takes extra disk space and hurts performance of write operations, as has already been mentioned. Indexes must be updated and possibly reorganized when you modify the contents of your tables, and the more indexes you have, the longer this takes. If you have an index that is rarely or never used, you'll slow down table modifications unnecessarily. In addition, MySQL considers indexes when generating an execution plan for retrievals. Creating extra indexes creates more work for the query optimizer. It's also possible (if unlikely) that MySQL will fail to choose the best index to use when you have too many indexes. Maintaining only the indexes you need helps the query optimizer avoid making such mistakes.

If you're thinking about adding an index to a table that is already indexed, consider whether the index you're thinking about adding is a leftmost prefix of an existing multiple-column index. If so, don't bother adding the index because, in effect, you already have it. (For example, if you already have an index on state, city, and zip, there is no point in adding an index on state.)

Match index types to the type of comparisons you perform. When you create an index, most storage engines choose the index implementation they Match index types to the type of comparisons you perform. When you create an index, most storage engines choose the index implementation they will use. For example, InnoDB always uses B-tree indexes. MySQL also uses B-tree indexes, except that it uses R-tree indexes for spatial data types. However, the MEMORY storage engine supports hash indexes and B-tree indexes, and allows you to select which one you want. To choose an index type, consider what kind of comparison operations you plan to perform on the indexed column:

• For a hash index, a hash function is applied to each column value. The resulting hash values are stored in the index and used to perform lookups. (A hash function implements an algorithm that is likely to produce distinct hash values for distinct input values. The advantage of using hash values is that they can be compared more efficiently than the original values.) Hash indexes are very fast for exact-match comparisons performed with the = or <=> operators. But they are poor for comparisons that look for a range of values, as in these expressions:

id < 30
weight BETWEEN 100 AND 150

• B-tree indexes can be used effectively for comparisons involving exact or range-based comparisons that use the <, <=, =, >=, >, <>, !=, and BETWEEN operators. B-tree indexes can also be used for LIKE pattern matches if the pattern begins with a literal string rather than a wildcard character.

If you use a MEMORY table only for exact-value lookups, a hash index is a good choice. This is the default index type for MEMORY tables, so you need do nothing special. If you need to perform range-based comparisons with a MEMORY table, you should use a B-tree index instead. To specify this type of index, add USING BTREE to your index definition. For example:

CREATE TABLE lookup
(
  id   INT NOT NULL,
  name  CHAR(20),
  PRIMARY KEY USING BTREE (id)
) ENGINE = MEMORY;

If the types of statements that you expect to execute warrant it, a single MEMORY table can have both hash indexes and B-tree indexes, even on the same column.

Some types of comparisons cannot use indexes. If you perform comparisons only by passing column values to a function such as STRCMP(), there is no value in indexing it. The server must evaluate the function value for each row, which precludes use of an index on the column.

Use the slow-query log to identify queries that may be performing badly. This log can help you find queries that might benefit from indexing. You can view this log directly (it is written as a text file), or use the mysqldumpslow utility to summarize its contents. (See Chapter 11, "General MySQL Administration," for a discussion of MySQL's log files.) If a given query shows up over and over in the slow-query log, that's a clue you've found a query that might not be written optimally. You may be able to rewrite it to make it run more quickly. Keep in mind when assessing your slow-query log that "slow" is measured in real time, so more queries will show up in the slow-query log on a heavily loaded server than on a lightly loaded one.